Competitor & Platform Data

MSD (Meso Scale Discovery)

Electrochemiluminescence immunoassay platform. The scraped dataset contains assay specifications extracted from MSD's published assay list PDF, including detection limits and dynamic ranges for each analyte.

Column	Example	Description
analyte	IL-6	Target protein name
catalog_number	K151QWD	MSD catalog ID
llod_pg_ml	0.06	Lower limit of detection (pg/mL)
range_pg_ml	0.06–10000	Dynamic range
sample_type	serum, plasma	Compatible matrices

Join key: analyte → text match to protein_map.gene_name or protein_map.protein_name

uv run python -m bioingest.scrape_competitors msd
# Athena
SELECT analyte, llod_pg_ml, range_pg_ml FROM bioingest.competitors_msd__msd_assays WHERE analyte LIKE '%IL-%';

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Quanterix (Simoa)

Single molecule array (Simoa) digital immunoassay platform. Per-kit specifications scraped from product pages including sensitivity, dynamic range, and sample volume requirements.

Column	Example	Description
assay_name	Simoa NF-light Advantage Kit	Kit name
analyte	NF-L	Target protein
lod	0.038 pg/mL	Limit of detection
lloq	0.174 pg/mL	Lower limit of quantitation
dynamic_range	0–2000 pg/mL	Quantifiable range
sample_volume	25 µL	Required volume

Join key: analyte → text match to protein_map.gene_name

uv run python -m bioingest.scrape_competitors quanterix
# Athena
SELECT analyte, lod, dynamic_range FROM bioingest.competitors_quanterix__quanterix_assays;

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Alamar (NULISAseq)

Proximity ligation-based proteomic platform. Panel target lists scraped from Alamar's website, including panel membership, UniProt IDs, and detection characteristics across multiple panels (Inflammation, Oncology, CNS, Cardio).

Column	Example	Description
target	IL6	Target gene name
uniprot_id	P05231	UniProt accession
panel	Inflammation 250	Panel membership
lod_pg_ml	0.01	Limit of detection
category	Cytokine	Functional category

Join key: uniprot_id → protein_map.uniprot_id (direct)

uv run python -m bioingest.scrape_competitors alamar
# Athena
SELECT target, uniprot_id, panel, lod_pg_ml FROM bioingest.competitors_alamar__all_targets
WHERE panel LIKE '%Inflammation%';

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Nomic (Omni 1000)

Aptamer-based proteomic platform. The Omni 1000 target list contains the full set of proteins measured by Nomic's platform, with UniProt IDs and target metadata.

Column	Example	Description
target_name	EGFR	Protein target
uniprot_id	P00533	UniProt accession
panel	Omni 1000	Platform panel

Join key: uniprot_id → protein_map.uniprot_id (direct)

uv run python -m bioingest.scrape_competitors nomic
# Athena
SELECT target_name, uniprot_id FROM bioingest.competitors_nomic__omni_1000_targets;

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SomaLogic (SomaScan)

Aptamer-based proteomics platform measuring 11K+ proteins. The menu dataset lists all SOMAmers (aptamer reagents) with target UniProt IDs, sensitivity, and panel tier (11K/7K/5K). Disease-specific panels extracted via Playwright.

Column	Example	Description
seq_id	2575-5	SOMAmer reagent ID
target	EGFR	Target protein name
uniprot_id	P00533	UniProt accession
entrez_gene_id	1956	Entrez Gene ID
menu_version	11K	Platform tier
dilution	0.005%	Assay dilution

Join key: uniprot_id → protein_map.uniprot_id (direct)

uv run bioingest download somalogic --all
# Athena
SELECT target, uniprot_id, menu_version FROM bioingest.somalogic__somascan_menu
WHERE target LIKE '%TNF%';

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HPA / Olink (Human Protein Atlas)

Tissue and cell-type protein expression atlas combining antibody-based imaging, transcriptomics, and Olink proteomics. The proteinatlas bulk download provides protein-level expression across tissues, subcellular locations, and blood protein concentrations.

Column	Example	Description
gene	EGFR	Gene name
uniprot	P00533	UniProt accession
tissue	liver	Tissue name
level	High	Expression level (Not detected/Low/Medium/High)
reliability	Enhanced	Annotation reliability

Join key: uniprot → protein_map.uniprot_id (direct)

uv run bioingest download hpa_olink
# Athena
SELECT gene, tissue, level FROM bioingest.hpa_olink__olink_data WHERE gene = 'EGFR';